Hy3S -- Hybrid Stochastic Simulation for Supercomputers
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There are step by step instructions on how to download and install Hy3S.

Required Components

• NetCDF C/C++/Fortran90 API as a gzipped tar file or a compressed tar file, installed on your favorite (super)computer. (Free)
• The NetCDF Toolbox for MATLAB, which consists of a platform-specific mexfile and some platform-independent M files, downloadable here. (Free)
• MATLAB v7.0 R14 or later (Mathworks), available for many platforms. (Not Free)

The GUI and Simulation Code

• The Matlab GUI M-files, simulation source code, and binaries are released using Sourceforge's File Tracker. Go to the official download site for all files.
• Compilation of the source code requires a Fortran95 compiler that accepts certain basic declarations.
• There are also pre-compiled versions of the simulation code for the Intel x86 and ia64 (Itanium2) architectures using Linux. The pre-compiled versions include all of the binaries, the source code, and a working/compiled version of the NetCDF library.
• The source code is relatively easy to compile (the MakeFile is simple), but if you have any problems on a specific architecture then please contact Howard Salis. Binaries for Sun Sparc and IBM PowerPC can be made available on request.

The latest source code is located in the Sourceforge CVS. Read about direct anonymous checkout.